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Dec 2024
Feng S, Huang L, Pournara AV, Huang Z, Yang X, Zhang Y, Brazma A, Shi M, Papatheodorou I, Miao Z
Alleviating batch effects in cell type deconvolution with SCCAF-D
Journal Article
Publishers version: doi: 10.1038/s41467-024-55213-x
Dec 2024
Nasr E, Amato P, Bhardwaj A, Blankenberg D, Brites D, Cumbo F, Do K, Ferrari E, Griffin TJ, Gruening B, Hiltemann S, Jagtap P, Mehta S, Métris KL, Momin S, Oba A, Pavloudi C, Pechlivanis N, Péguilhan R, Psomopoulos F, Rosic N, Schatz MC, Schiml VC, Siguret C, Soranzo N, Stubbs A, Van Heusden P, Vohra M, microGalaxy Community, Zierep P, Batut B
microGalaxy: A gateway to tools, workflows, and training for reproducible and FAIR analysis of microbial data
PrePrint
Publishers version: doi: 10.1101/2024.12.23.629682
Dec 2024
Long KA, Lister A, Jones MRW, Adamski NM, Ellis RE, Chedid C, Carpenter SJ, Liu X, Backhaus AE, Goldson A, Knitlhoffer V, Pei Y, Vickers M, Steuernagel B, Kaithakottil GG, Xiao J, Haerty W, Macaulay IC, Uauy C
Spatial Transcriptomics Reveals Expression Gradients in Developing Wheat Inflorescences at Cellular Resolution
PrePrint
Publishers version: doi: 10.1101/2024.12.19.629411
Dec 2024
Wright J, Baker K, Barker T, Catchpole L, Durrant A, Fraser F, Gharbi K, Harrison C, Henderson S, Irish N, Kaithakottil G, Leitch IJ, Li J, Lucchini S, Neve P, Powell R, Rees H, Swarbreck D, Watkins C, Wood J, McTaggart S, Hall A, MacGregor D
Chromosome-scale genome assembly and de novo annotation of Alopecurus aequalis
Journal Article
Publishers version: doi: 10.1038/s41597-024-04222-y
Dec 2024
Mould AW, Wright DJ, Bornemann KD, Hengerer B, Pinnock R, Drydale E, Bancroft J, Hall NAL, von Delft A, Brennan PE, Harrison PJ, Haerty W, Tunbridge EM
Identification and characterization of human KALRN mRNA and Kalirin protein isoforms
Journal Article
Publishers version: doi: 10.1093/cercor/bhae470
Nov 2024
Kapoor M, Ventura ES, Walsh A, Sokolov A, George N, Kumari S, Provart NJ, Cole B, Libault M, Tickle T, Warren WC, Koltes JE, Papatheodorou I, Ware D, Harrison PW, Elsik C, Yordanova G, Burdett T, Tuggle CK
Building a FAIR data ecosystem for incorporating single-cell transcriptomics data into agricultural genome to phenome research
Journal Article
Publishers version: doi: 10.3389/fgene.2024.1460351
Oct 2024
Wright J, Baker K, Barker T, Catchpole L, Durrant A, Fraser F, Gharbi K, Harrison C, Henderson S, Irish N, Kaithakottil G, Leitch IJ, Li J, Lucchini S, Neve P, Powell R, Rees H, Swarbreck D, Watkins C, Wood J, McTaggart S, Hall A, MacGregor DR
Chromosome-scale genome assembly and de novo annotation of Alopecurus aequalis.
PrePrint
Publishers version: doi: 10.1101/2024.10.09.616956
Oct 2024
Annese D, Romani F, Grandellis C, Ives L, Frangedakis E, Buson FX, Molloy JC, Haseloff J
Semi-automated workflow for high-throughputAgrobacterium-mediated plant transformation
PrePrint
Publishers version: doi: 10.1101/2024.10.09.617252
Oct 2024
Moreno-Gonzalez M, Hampton K, Ruiz P, Beasy G, Nagies FS, Parker A, Lazenby J, Bone C, Alava-Arteaga A, Patel M, Hellmich C, Luri-Martin P, Silan E, Philo M, Baker D, Rushbrook SM, Hildebrand F, Rushworth SA, Beraza N
Regulation of intestinal senescence during cholestatic liver disease modulates barrier function and liver disease progression
Journal Article
Publishers version: doi: 10.1016/j.jhepr.2024.101159
Sep 2024
Wojtowicz EE, Hampton K, Moreno-Gonzalez M, Utting CL, Lan Y, Ruiz P, Beasy G, Bone C, Hellmich C, Maynard R, Acton L, Markham M, Troeberg L, Telatin A, Kingsley RA, Macaulay IC, Rushworth SA, Beraza N
Low protein diet protects the liver from Salmonella Typhimurium-mediated injury by modulating the mTOR/autophagy axis in macrophages
Journal Article
Publishers version: doi: 10.1038/s42003-024-06932-w
Sep 2024
Ryan C, Fraser F, Irish N, Barker T, Knitlhoffer V, Durrant A, Reynolds G, Kaithakottil G, Swarbreck D, De Vega JJ
A haplotype-resolved chromosome-level genome assembly ofUrochloa decumbenscv. Basilisk resolves its allopolyploid ancestry and composition
PrePrint
Publishers version: doi: 10.1101/2024.09.25.614935
Sep 2024
Böhne A, Fernández R, Leonard JA, McCartney AM, McTaggart S, Melo-Ferreira J, Monteiro R, Oomen RA, Vinnere Pettersson O, Struck TH
Contextualising samples: supporting reference genomes of European biodiversity through sample and associated metadata collection
Journal Article
Publishers version: doi: 10.1038/s44185-024-00053-7
Sep 2024
Nash WJ, Man A, McTaggart S, Baker K, Barker T, Catchpole L, Durrant A, Gharbi K, Irish N, Kaithakottil G, Ku D, Providence A, Shaw F, Swarbreck D, Watkins C, McCartney AM, Formenti G, Mouton A, Vella N, von Reumont BM, Vella A, Haerty W
The genome sequence of the Violet Carpenter Bee, Xylocopa violacea (Linnaeus, 1785): a hymenopteran species undergoing range expansion
Journal Article
Publishers version: doi: 10.1038/s41437-024-00720-2
Aug 2024
Hill R, Smith D, Canning G, Grey M, Hammond-Kosack KE, McMullan M
Starshipgiant transposable elements cluster by host taxonomy using kmer-based phylogenetics
PrePrint
Publishers version: doi: 10.1101/2024.08.30.610507
Aug 2024
Wilsenach J, Deane CM, Reinert G, Warnaby K
Graph models of brain state in deep anaesthesia reveal sink state dynamics of reduced spatiotemporal complexity and integration
PrePrint
Publishers version: doi: 10.1101/2024.08.21.608935
Show more
Our research
Research strategy
Our Culture
Open and FAIR Data
Explore our research
Research projects
Publications
Our research programmes
Cellular Genomics
Decoding Biodiversity
Delivering Sustainable Wheat
National Bioscience Research Infrastructures
Earlham Biofoundry
Transformative Genomics
Scientific Groups
Technology platforms
High-Performance Sequencing
Single-cell and Spatial Analysis
Earlham Biofoundry
Tools and resources
Research e-Infrastructure
Cloud Computing Infrastructure for Data-intensive Bioscience
Web Hosting for Sites, Tools and Web Services
Engaging with Earlham Institute
Earlham Enterprises Ltd
Training and events
Events Calendar
About our training
Year in industry
Internships and opportunities
Immersive visitors
Stories and impact
News
Articles
Impact Stories
Impact Through Policy Advocacy
Public engagement and outreach
Communications at EI
About
Our Vision and Mission
Our Culture
Inclusivity, diversity, equality and accessibility
Governance
Scientific Advisory Board
Our Management Team
Operations Division
People
Staff
Careers
Careers overview
Vacancies
Postgraduate Studies
Group leaders
Fellowships
Life at Earlham Institute
Living in Norfolk
Contact
Socials