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Mar 2025
Hill R, Reynolds G, Hall N, Swarbreck D
Leveraging existing data to maximise quality and consistency across gene model annotations: aFusariumpan-annotation
PrePrint
Publishers version: doi: 10.1101/2025.03.12.642647
Mar 2025
Grewal S, Yang C, Krasheninnikova K, Collins J, Wood JMD, Ashling S, Scholefield D, Kaithakottil GG, Swarbreck D, Yao E, Sen TZ, King IP, King J
Chromosome-level haplotype-resolved genome assembly of bread wheat’s wild relative Aegilops mutica
Journal Article
Publishers version: doi: 10.1038/s41597-025-04737-y
Mar 2025
Hill R, Grey M, Fedi MO, Smith D, Canning G, Ward SJ, Irish N, Smith J, McMillan VE, Hammond J, Osborne S, Reynolds G, Smith E, Chancellor T, Swarbreck D, Hall N, Palma-Guerrero J, Hammond-Kosack KE, McMullan M
Evolutionary genomics reveals variation in structure and genetic content implicated in virulence and lifestyle in the genus Gaeumannomyces
Journal Article
Publishers version: doi: 10.1186/s12864-025-11432-0
Feb 2025
Wilkinson SR, Aloqalaa M, Belhajjame K, Crusoe MR, de Paula Kinoshita B, Gadelha L, Garijo D, Gustafsson OJR, Juty N, Kanwal S, Khan FZ, Köster J, Peters-von Gehlen K, Pouchard L, Rannow RK, Soiland-Reyes S, Soranzo N, Sufi S, Sun Z, Vilne B, Wouters MA, Yuen D, Goble C
Applying the FAIR Principles to computational workflows
Journal Article
Publishers version: doi: 10.1038/s41597-025-04451-9
Feb 2025
Peel N, Martin S, Heavens D, Yu DW, Clark MD, Leggett RM
MARTi: a real-time analysis and visualisation tool for nanopore metagenomics
PrePrint
Publishers version: doi: 10.1101/2025.02.14.638261
Feb 2025
Kurta K, Fedi MO, Baker K, Barker T, Catchpole L, Ciofi C, Cocco A, Diedericks G, Diroma MA, Hindar K, Iannucci A, Irish N, Knitlhoffer V, Laikre L, Leitão HG, Lucchini S, McTaggart S, Pálsson A, Pettersson ME, Ryman N, Snorrason SS, Svardal H, Swarbreck D, Waterhouse RM, Watkins C, Xiao HH, Gharbi K, Jónsson ZO, Andersson L
Whole genome sequencing reveals how plasticity and genetic differentiation underlie sympatric morphs of Arctic charr
PrePrint
Publishers version: doi: 10.1101/2025.02.10.637319
Feb 2025
Ranheim Sveen T, Viketoft M, Bengtsson J, Lejoly J, Buegger F, Pritsch K, Strengbom J, Fritscher J, Hildebrand F, Osburn E, Hannula E, Bahram M
Functional diversity of soil microbial communities increases with ecosystem development
PrePrint
Publishers version: doi: 10.1101/2025.02.05.636575
Feb 2025
Boulton W, Salamov A, Grigoriev IV, Calhoun S, LaButti K, Riley R, Barry K, Fong AA, Hoppe CJM, Metfies K, Oetjen K, Eggers SL, Müller O, Gardner J, Granskog MA, Torstensson A, Oggier M, Larsen A, Bratbak G, Toseland A, Leggett RM, Moulton V, Mock T
Metagenome-assembled-genomes recovered from the Arctic drift expedition MOSAiC
Journal Article
Publishers version: doi: 10.1038/s41597-025-04525-8
Feb 2025
Sirey TM, Roberts K, Haerty W, Bedoya-Reina O, Rogatti-Granados S, Tan JY, Li N, Heather LC, Carter RN, Cooper S, Finch AJ, Wills J, Morton NM, Marques AC, Ponting CP
Correction: The long non-coding RNA Cerox1 is a post transcriptional regulator of mitochondrial complex I catalytic activity
Journal Article
Publishers version: doi: 10.7554/elife.106198
Feb 2025
Christenhusz MJM, Ruhsam M, Leitch IJ, Patron N, Royal Botanic Gardens Kew Genome Acquisition Lab, Royal Botanic Garden Edinburgh Genome Acquisition Lab, Darwin Tree of Life Barcoding collective, Plant Genome Sizing collective, Wellcome Sanger Institute Tree of Life Management, Samples and Laboratory team, Wellcome Sanger Institute Scientific Operations: Sequencing Operations, Wellcome Sanger Institute Tree of Life Core Informatics team, Tree of Life Core Informatics collective, Darwin Tree of Life Consortium
The genome sequence of the common marigold, Calendula officinalis L.
Journal Article
Publishers version: doi: 10.12688/wellcomeopenres.23614.1
Jan 2025
Li Y, Pulford CV, Díaz P, Perez-Sepulveda BM, Duarte C, Predeus AV, Wiesner M, Heavens D, Low R, Schudoma C, Montaño A, Hall N, Moreno J, Hinton JCD
Potential links between human bloodstream infection by Salmonella enterica serovar Typhimurium and international transmission to Colombia
Journal Article
Publishers version: doi: 10.1371/journal.pntd.0012801
Jan 2025
Ryan C, Fraser F, Irish N, Barker T, Knitlhoffer V, Durrant A, Reynolds G, Kaithakottil G, Swarbreck D, De Vega JJ
A haplotype-resolved chromosome-level genome assembly of Urochloa decumbens cv. Basilisk resolves its allopolyploid ancestry and composition
Journal Article
Publishers version: doi: 10.1093/g3journal/jkaf005
Jan 2025
Liu X, Lin X, Kang J, Long KA, Yue J, Chen C, Wang D, Lister A, Macaulay IC, Liu X, Uauy C, Xiao J
Decoding cellular transcriptional regulatory networks governing wheat inflorescence development
PrePrint
Publishers version: doi: 10.1101/2025.01.18.633750
Jan 2025
Peers JA, Nash WJ, Haerty W
Gene pseudogenization in fertility-associated genes in cheetah (Acinonyx jubatus), a species with long-term low effective population size
Journal Article
Publishers version: doi: 10.1093/evolut/qpaf005
Jan 2025
Cook NM, Gobbato G, Jacott CN, Marchal C, Hsieh CY, Lam AHC, Simmonds J, del Cerro P, Gomez PN, Rodney C, Cruz-Mireles N, Uauy C, Haerty W, Lawson DM, Charpentier M
Autoactive CNGC15 enhances root endosymbiosis in legume and wheat
Journal Article
Publishers version: doi: 10.1038/s41586-024-08424-7
Show more
Our research
Research strategy
Our Culture
Open and FAIR Data
Explore our research
Research projects
Publications
Our research programmes
Cellular Genomics
Decoding Biodiversity
Delivering Sustainable Wheat
National Bioscience Research Infrastructures
Earlham Biofoundry
Transformative Genomics
Scientific Groups
Technology platforms
High-Performance Sequencing
Single-cell and Spatial Analysis
Earlham Biofoundry
Tools and resources
Research e-Infrastructure
Engaging with Earlham Institute
Earlham Enterprises Ltd
Training and events
Events Calendar
About our training
Year in industry
Internships and opportunities
Immersive visitors
Stories and impact
News
Articles
Impact Stories
Impact Through Policy Advocacy
Public engagement and outreach
Communications at EI
About
Our Vision and Mission
Our Culture
Inclusivity, diversity, equality and accessibility
Governance
Scientific Advisory Board
Our Management Team
Operations Division
People
Staff
Careers
Careers overview
Vacancies
Postgraduate Studies
Group leaders
Fellowships
Life at Earlham Institute
Living in Norfolk
Contact
Socials