Single-cell and Spatial analysis

Spatial Transcriptomics

The MERSCOPE™ is a state-of-the-art spatial genomics platform that enables the visualization and mapping of hundreds to tens of thousands of RNA species.

The instrument utilises the MERFISH (Multiplexed Error Robust Fluorescence In Situ Hydridization) technology to quantify and map the transcriptome of whole tissues down to a sub cellular level.

The Earlham Institute is a Certified Service Provider for the MERSCOPE™ in situ Spatial Transcriptomics Workflow.

High-throughput single-cell sequencing.

The latest in advanced single-cell analysis technology, the Chromium X platform supports protocols for 3’ and 5’ RNA-sequencing (including V(D)J immune cell profiling) as well as ATAC-seq, CITE-seq and multi-omic profiling. Chromium X has increased the capacity of the 10X system to enable loading of 16 samples and up to 20,000 cells per sample. The platform also has improved user interface and overall system stability.

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Cutting edge spectral imaging cell sorter.

We are one of the earliest adopters of this groundbreaking platform. Six imaging parameters enable pictures of each cell sorted to be captured in addition to the spectral 78 fluorescence channel detection from 5 lasers. Laser configuration - UV (355nm), Violet (405 nm), Blue (488 nM), Yellow-Green (561nm), Red (640 nm) and index sorting capability.

Imaging parameters captured can now isolate cells based on the morphology of specific cell types. The spectral capabilities facilitate autofluorescence exclusion and multiparameter analysis not previously possible on conventional flow cytometers.

This instrument can sort into 96- and 384- well plates as well as up to 6 population simultaneous sorting.

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Advanced cell sorting enabling high parameter single-cell sorting.

Our advanced cell sorter has a five laser configuration - UV (355nm), Yellow-Green (561nm), Violet (405 nm), Blue (488 nM), Red (640 nm) and index sorting capability.

Enabling up to 20-parameter sorts, the Fusion can be used to isolate extremely rare cells from complex populations, for example, blood stem and progenitor cells or different immune cell populations.

This instrument can sort into 96- and 384- well plates and can also be used for enrichment sorts before single-cell analysis on the 10X Genomics Chromium Instrument.

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Cell sorting and imaging in parallel.

Our cellenONE instrument is similar to FACS, but overcomes some of the challenges encountered when sorting larger, or more fragile cells. Using a glass capillary, individual cells are imaged and gently dispensed into an array of substrates, including 96- and 384- well plates.

The instrument is also equipped with four fluorescence channels (DAPI, GFP, Cy3/RFP and Cy5) enabling live/dead cell selection and isolation of rare cell populations. As the instrument sorts, it images each cell, and so some information about cell phenotype can be associated with any downstream sequencing.

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Isolation of single cells or micro biopsies from tissue sections.

Our laser microdissection platform can image and cut individual cells, or regions of interest, from tissue sections and collect them in tubes or 96-well plates for downstream analysis.

The instrument is a fluorescence microscope, equipped with three fluorescence channels (DAPI, GFP and Cy3/RFP) and high magnification lenses (up to 150X) allowing fine dissection of regions or cells of interest.

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