Day 1 - 01 April 2019
12:00 - 13:00
Lunch and registration
13:00 - 13:30
Welcome and introduction
13:30 - 14:30
Working with signalling networks - why and how?
Tamás Korcsmáros, EI
14:30 - 15:00
Coffee
15:00 - 16:00
Flash presentations from delegates
16:00 - 17:00
Speed dating
Day 2 - 02 April 2019
09:00 - 09:30
Coffee
09:30 - 10:30
Signalling pathways and their visualisation
Tamás Korcsmáros, EI
10:30 - 11:00
Coffee
11:00 - 12:30
Resources and standards for studying signalling interactions
Livia Perfetto, EMBL-EBI
12:30 - 13:30
Lunch
13:30 - 14:30
Keynote lecture: Jasmine Fisher
Principal Researcher, Microsoft Research Cambridge.
Professor of Systems Biology, University of Cambridge.
14:30 - 15:30
Data Analysis with Cytoscape
Livia Perfetto, EMBL-EBI
15:30 - 16:00
Coffee
16:00 - 17:00
Advanced analysis and visualisation with Cytoscape
Livia Perfetto, EMBL-EBI
Day 3 - 03 April 2019
09:00 - 09:30
Coffee
09:30 - 09:45
Recap of day 1
09:45 - 10:45
Data visualisation with Cytoscape
Márton Olbei and Agatha Treveil, EI
10:45 - 11:00
Coffee
11:00 - 12:00
Regulatory networks
Padhmanand Sudhakar, EI
12:00 - 13:00
Lunch
13:00 - 14:30
Integrating omics data to signalling networks and functional analysis
Tamás Korcsmáros, EI
14:30 - 15:00
Coffee
15:00 - 17:00
Hands-on with Cytoscape and own data
Márton Olbei, Agatha Treveil and Lejla Gul, EI
Day 4 - 04 April 2019
09:00 - 09:30
Coffee
09:30 - 09:45
Recap of day 3
09:45 - 10:45
Lecture: From literature curated signalling networks to boolean models
Dénes Türei, Saez-Rodriguez Group, University of Heidelberg
10:45 - 11:00
Coffee
11:00 - 12:30
Hands-on session: Using pypath and CellNOpt
Dénes Türei, Saez-Rodriguez Group, University of Heidelberg
12:30 - 13:30
Lunch
13:30 - 14:30
Systematic functional analysis and integration of quantitative multi-omic datasets
Dénes Türei, Saez-Rodriguez Group, University of Heidelberg
14:30 - 15:00
Coffee
15:00 - 17:00
Hands-on: KSEA, DOROTHEA, PROGENY, CARNIVAL, PHONEMES
Aurélien Dugourd, Saez-Rodriguez Group, University of Heidelberg
18:30 - 22:00
Course dinner - Trattoria Rustica
Day 5 - 05 April 2019
08:30 - 09:00
Coffee
09:00 - 09:15
Recap of day 4
09:15 - 10:30
Discussion and work with own data
10:30 - 11:00
Coffee
11:00 - 12:30
Discussion and work with own data
12:30 - 13:00
Wrap up and final Q&A
13:00 - 14:00
Lunch and departure